Research Article | Open Access
Yaser Ayesh AlMaroai1,2
1Department of Biology, Faculty of Applied Science, Umm Al-Qura University, Makkah 21421, Saudi Arabia.
2Research Laboratories Centre, Faculty of Applied Science, Umm Al-Qura University, Makkah, Saudi Arabia.
J. Pure Appl. Microbiol., 2019, 13 (4): 2087-2095 | Article Number: 5728 | © The Author(s). 2019
Received: 03/06/2019 | Accepted: 22/07/2019 | Published: 16/12/2019

A greenhouse nursery study was conducted to assess the interactive effects of arbuscular mycorrhizal (AM) fungus (Glomus mosseae) and nitrogen-fixing bacteria (Azotobacter chroococcum) on leading microorganisms group, growth, and nutrition of onion plants grown in unsterile calcareous soil in a greenhouse pot experiment. The results showed that Glomus mosseae and Azotobacter chroococcum significantly (P=0.05) increased bacterial, actinomycetes, Azotobacter count, and nitrogenase activity in onion rhizosphere. Moreover, coupling both organisms significantly increased sporulation and mycorrhizal infection of onion plant roots. Dry weight, nitrogen, and phosphorus uptake of shoots of dually inoculated plants were far higher than of shoots of plants inoculated with either microorganisms. It could conclude that microbial soil co-inoculation Glomus mosseae and Azotobacter chroococcum significantly enhance plant growth, N and P uptake of onion, and the strategy may be applied to obtain better crop productivity.


Inoculation; Arbuscular Mycorrhizal; Nitrogen fixation; Rhizosphere microflora; Nirtogenase activity.


The mycorrhizal fungi on plant development effects have known, and inoculation with these microorganisms is considered an effective method for the improved ability of plants to cope with harmful soil conditions. However, the co-inoculations of mycorrhizal fungi and other rhizosphere inhabitants into soil can be damaging to the mycorrhizal fungi and certain rhizosphere microorganisms1. Interactions between mycorrhizal fungi and other soil microorganisms may occur widely. Shifts in the presence or abundance of microbial species occur in the rhizosphere of mycorrhizal plants2. Rhizobacteria can affect plant growth according to the environmental conditions, host genotype and mycorrhizal status3,4. Their effects range from promoting the development some of the plant organs to inhibiting others simultaneously5. Similarly, rhizobacteria can stimulate6 or inhibit7 mycorrhizal formation. The AM fungi also may increase8 or decrease9 soil bacterial population in the mycorrhizosphere. On the other hand, mycorrhizal fungi exert profound effects on other rhizosphere microorganisms, either through indirect effects on host physiology and changes in root exudates or directly via fungal exudates3.

Seed inoculation with rhizobacteria may also stimulate the infection of roots by the indigenous VAM community. Behl3 and Sharma10 reported synergistic effects between Azotobacter and Glomu. A large number of bacterial populations (including actinomycetes) have recovered from either individual or the various rhizosphere combinations of tomato plants inoculated with the mycorrhizal fungus Glomus fasciculatus and Azotobacter chroococcum11. Plants inoculated with both G. fasciculatus and A. chroococcum had greater numbers of bacteria and actinomycetes in the rhizosphere than plants inoculated with either G. fasciculatus or A. chroococcum alone. Behl12 observed similar effects of inoculation on the bacterial population in wheat. Brown and Carr13 found that dual inoculation of roots of lettuce seedlings with AM fungi and A. chroococcum produced larger plants than either inoculum alone in the partially sterilized, P deficient soil. Singh (1992) found that inoculation of N2– fixing (Azospirillum brasilense, A. lipoferum, and Azotobacter chroococcum) and P solubilizing (Bacillus polymyxa and Pseudomonas striata) bacteria enhanced root volume and percent VAM root colonization of Pennisetum padicillatum in the presence of Glomus macrocarpum. It was also found in this study that inoculation with these tow groups of bacterial resulted in increased number of VAM spores.

The current work aims to investigate the response of main soil microorganisms (bacteria, actinomycetes and fungi) to soil inoculation with mycorrhizal fungus Glomus mosseae and Azotobacter chroococcum in the rhizosphere of onion plant. Besides, the interactions between these organisms and their effect on plant growth and nutrition explored.

Materials and Methods

Preparation of microbial inoculums
The arbuscular mycorrhizal inoculum consisted of the root, hyphal, spores, and growth media from a pot culture of onion plants, which previously infected with Glomus mosseae grown for 4 months in pot. The inoculum contained 250 spores/g soils together with mycelium and mycorrhizal root fragments that used. At rate of 5 g/pot14. The number of spores in the soil sample determined by the wet sieving method15. Mycorrhizal inoculation completed by spreading the inoculum on the surface of the soil prior to seed sowing.

Azotobacter chroococcum (non-symbiotic nitrogen fixation) gained from the Faculty of Agriculture, Soils and Water Department., Assiut University, Egypt, which supplies a commercial scale biofertilizer called “Azotobactrien.” The strain was grown on nutrient agar at 28 ÷C for 72 hr. The massive growth bacterial cultures scraped into sterile tap water to give a suspension containing 1.7 X 107 cells/ml. Five ml of this suspension added per pot during planting16.

Greenhouse experiment
The trial was carried out within an automated day-night temperature-controlled environment of the Greenhouse of Biology Department, Faculty of Applied Science, Umm Al-Qura University, Saudi Arabia. A pot experiment was conducted in 2016 season to study the interactions between the arbuscular mycorrhizal fungus, Glomus mosseae, and Azotobacter chroococcum and their effects on onion plants in calcareous soil. Some physical and chemical properties of soil used in the experiment presented in Table 1, measured according to Page et al.17. The experimental design used a completely randomized block design by employing four treatments with four replications of each treatment. The treatments included: uninoculated control (C); inoculation with AM fungus (Glomus mosseae) (Gm); inoculation with Azotobacter chroococcum (Azot); mixed inoculation with Glomus mosseae and Azotobacter chroococcum (Gm + Azot).

Table (1):
Physical and chemical characteristics of soil used in the experiment.

Soil Property
Clay  (%)
Silt (%)
Sand (%)
Textural class
Sandy loam
Total CaCO3 (%)
EC dS/cm-1 (1:1)
pH (1:1 suspension)
Total nitrogen (%)
Organic matter (%)
Available P mg g-1 soil

Three Seedlings of onion (Allim cepa L.) cultivar Giza-6 were planted in 30 cm diameter plastic pots containing 5 kg sieved calcareous soil. The pots irrigated to field capacity (47%) during the experimental period under greenhouse condition. After two weeks post planted, the seedlings thinned to two uniform plants per pot.

Microbial determination
Plants were harvested 20 and 40 days after planting. At each harvest, part of the root system of each 4 replicates, was cleaned with a stream of tap water, cleared in 2.5 % KOH at 90 ÷C and stained with trypan blue (0.05 %) was used for staining as described by18 and the percent root colonization estimated by adopting the gridline intersect method19. The total bacteria, actinomycetes, and fungi population were estimated using soil extract agar, starch casein agar, and Czapek agar medium, respectively, whereas Azotobacter estimated on Ashby,s Mannitol Agar medium20.

Nitrogenase activity assay
Nitrogenase activity of the rhizosphere soil microorganisms was assayed using the acetylene reduction technique21. Briefly, 1 g rhizosphere soil was placed immediately in a canning jar fitted with a serum stopper for gas sampling. Ten percent of the gaseous atmosphere in the jar was removed and replaced by acetylene (C2H2). The jars were then tightly sealed with parafilm and incubated at 30°C for 24 h. A volume of 0.1 ml gas sample from each jar was removed and injected into a Pye Unicome 104 inch gas chromatograph containing a flame ionization detector and a 5 Ft. X 118-inch glass column of activated alumina (80-100 mesh). The oven temperature was 150°C, and the carrier gas was nitrogen at a flow rate of 30 ml/min.

Plant analyses
Plants were harvested 20 and 40 days after planting. Shoot biomass determined after drying the plant samples to constant weight at 70°C in a hot air oven. The nitrogen content of shoot that determined by microKjeldhal method as outlined by Jackson22. The phosphorus content of shoot and root determined by the vanadomolybdate phosphoric yellow color method22.

Statistical analysis
The data reported in this paper were the mean values based on the four replications. Differences among treatments were tested by ANOVA and mean values among treatments were compared by Duncan,s Multiple Range Test at P = 0.05. Statistical analysis of the data was performed by using the statistical computer program23.


Effect on soil microorganisms population
Inoculation of onion plants with arbuscular mycorrhizal fungus G. mosseae or Azotobacter chroococcum significantly increased bacterial and actinomycetes numbers in the rhizosphere after 20 and 40 days (Table 2). Dual inoculation with both organisms highly significantly (P=0.05) increased rhizosphere bacteria or actinomycetes numbers. In the meantime, the fungal population in the rhizosphere was non-significantly increased in the presence of Azotobacter alone, whereas in the presence of G. mosseae alone or coupled with Azotobacter, the fungal count highly significantly dropped; more prominently during the first sample period.

Table (2):
Microbial population of onion rhizosphere as influenced by inoculation with Glomus moseae and Azotobacter chroococcum, 20 and 40 days after planting (DAS).

Treatments Bacterial population (107/g dry soil) Actinomycetes population (106/g dry soil) Fungal population (103/g dry soil)
20 DAS 40 DAS 20 DAS 40 DAS 20 DAS 40 DAS
C 0.9±1.3 4.1±1.5 2.3±1.2 5.4±1.6 3.3±1.9 5.1±1.4
Azoto. 1.2±1.2 5.4±1.3 3.6±1.4 7.1±1.3 3.8±2.0 5.7±1.7
Gm 1.4±1.6 5.9±1.8 4.2±1.5 8.0±1.3 1.9±1.6 2.8±1.5
Azoto.+Gm 1.9±1.3 6.3±1.5 5.2±1.6 10.2±1.6 2.2±1.8 3.1±1.5
L.S.D.        5 % 0.2±1.4 0.3±1.5 1.1±1.7 1.4±1.5 0.9±1.6 1.1±1.6

C: uninoculated control
Azoto.: inoculated with Azotobacter chroococcum.
Gm: inoculated with Glomus moseae.

The results of the current investigation apparently indicate that inoculation of onion plants with mycorrhizal fungus G. mosseae or Azotobacter chroococcum stimulated bacterial and actinomycetes multiplication though the former attenuated fungal development in the rhizosphere of the plant. Application of both organisms enhanced their stimulatory effect and slightly alleviated the suppressive impact of G. mosseae on fungal population. In the presence of Azotobacter, the net bacterial count (by subtracting the native control count) of the second sampling was almost 4 folds that of the first, whereas in the presence of mycorrhizal fungus G. mosseae it was only 3 fold. Dual inoculation only doubled the population density during the second sampling. The present result indicated that the stimulatory effect of Azotobacter is higher than that of mycorrhizal fungus G. mosseae. The observed changes in the population of the microorganisms can attribute to the ability of mycorrhiza-forming fungi to brought about several alterations in the rhizosphere. These include production of biologically active metabolites, decreased oxygen concentration, and modification of the composition and amount of plant root exudates or the extradical mycelium of AM fungi, which occupies a far higher volume of soil than roots and influence the chemical composition and pH of the soil24. Accordingly, the impact of mycorrhiza-forming fungi on microorganism populations could be significantly synergistic or antagonistics with the influence of root exudates. Additional, it is possible that AM fungi release non-soluble and/or volatile substances that can affect soil microorganisms25.

In this respect, Sood26 reported an increase in bacteria actinomycetes and dinitrogen fixing bacteria “Azotobacter” number in unsterile soil due to mycorrhizal fungi infection. In contrast, Meyer and Linderman27 observed that infection with mycorrhiza fungus reduced the multiplication of Streptomyces sp. McAllister et al.28 reported that mycorrhizal fungus G. mosseae reduced the saprophytic fungal population in the rhizosphere of maize and lettuce plants. Single and dual inoculation of wheat seedlings with Azotobacter chroococcum, Azospirillum brasilence or Streptomyces mutobilis, in sterilized soil, resulted in a significant stimulation of their population in the rhizosphere29. Two possible effects suggested by Behl et al.3 for the stimulating effect of Azotobacter on mycorrhiza are: 1) if absorbed into the roots, it can directly enhance of the metabolic activity of the mycorrhiza, or 2) the increasing leaf size could enhance the potential for photo-synthesizing nutrient supplies for the endophytes within the plants.

Effect of Azotobacter and mycorrhizal population and nitrogenase activity
Mycorrhizal inoculation increased the Azotobacter population in both inoculated and unionculated rhizosphere soil, and stimulated nitrogenase activity in onion rhizosphere, more prominently during the second sampling (Table 3). Azotobacter count mostly doubled when it combined with G. mosseae whereas nitrogenase activity stimulated by 1.2-1.3 fold. Table 4 shows that Azotobacter significantly (P=0.05) increased the spore number and infection percent of onion plants by native mycorrhiza. The same applied when Azotobacter was inoculated together with G. mosseae, where neither the spore count of the latter nor its infection percent significantly altered. Also, inoculation with mycorrhizal fungus G. mosseae increased the spore number and mycorrhizal infection to 3 fold or more compared with uninoculated treatments. That’s invistegation confirms the synergistic effect both organisms. Inoculation with Azotobacter seemed to increase the sporulation and mycorrhizal infection in the onion plant. It might attribute to the production of growth-promoting substances by the dinitrogen fixing bacteria. Behl et al.3 suggested that the increased mycorrhizal infection and sporulation due to phospho-bacteria or dinitrogen fixing bacteria in the rhizosphere might be due to the production of plant growth substances by these bacteria. Tilak and Dwivedi30 reported the excretion of auxins, cytokinins, and gibberellins in the rhizosphere of maize plants by Azospirillum brasilense stimulated spore germination of AM fungus Glomus fasciculatum.

Table (3):
Population of Azotobacter and nitrogenase activity in onion rhizosphere as influenced by inoculation with Glomus moseae and Azotobacter chroococcum, 20 and 40 days after planting (DAS).

Treatments Azotobacter population (104/g dry soil) Nitrogenase activity (nmol C2H2 /g soil/ hour)
20 DAS 40 DAS 20 DAS 40 DAS
C 0.25±1.2 0.97±1.1 10.30±0.3 26.22±0.3
Azoto. 5.12±0.9 12.70±1.4 90.14±0.1 182.85±0.4
Gm 0.48±1.5 2.10±0.9 13.78±0.2 52.15±0.2
Azoto.+Gm 10.25±1.2 25.90±1.3 114.02±0.3 220.90±0.1
L.S.D.        5 % 0.95±0.7 1.82±1.2 7.35±0.2 18.20±0.2

C: Uninoculated (control).
Azoto.: Inoculated with Azotobacter chroococcum.
Gm: Inoculated with Glomus moseae.

Table (4):
Mycorrhizal spores in soil and percentage mycorrhizal infection of onion roots as influenced by inoculation with Glomus moseae and Azotobacter chroococcum, 20 and 40 days after planting (DAS).

Treatments Mycorrhizal spores/10 g dry soil Mycorrhizal infection (%)
20 DAS 40 DAS 20 DAS 40 DAS
C 11.30±3.2 13.12±6.2 17±7.4 20±6.5
Azoto. 15.50±5.1 19.45±5.8 20±6.5 22±7.1
Gm 37.11±4.9 40.30±4.6 65±4.8 67±7.8
Azoto.+Gm 40.50±5.3 45.73±4.9 68±8.0 70±6.4
L.S.D.        5 % 4.40±3.8 5.25±5.3 6.33±5.3 7.11±7.o

C: uninoculated (control).
Azoto.: Inoculated with Azotobacter chroococcum.
Gm: Inoculated with Glomus moseae

Dinitrogen fixing bacteria in the rhizosphere can contribute to the supply of nitrogen in the soil, which improved plant development. The beneficial effects of Azotobacter on plant growth and nitrogen uptake by plant might be through nitrogen fixation31 or growth promoting substances32.

Effect on dry weight, N and P uptake
Onion dry weight was significantly (P=0.05) increased by inoculation with either of the two organisms, a response that was hardly affected by dual inoculation of both organisms (Fig.1). The nitrogen uptake of onion plants increased with the progress of age, with Azotobacter inoculation being significantly more initiative than inoculation with mycorrhizal fungus G. mosseae, whereas their dual application furthered such effect (Fig.2). Phosphorus uptake behaved even though if the presence of mycorrhizal fungus G. mosseae alone or coupled with Azotobacter stimulated its uptake, more prominently under the latter condition, without affecting the efficacy of mycorrhizal fungus G. mosseae (Fig.3). The current result confirms the additive beneficial effects of both organisms. Manske et al.31 reported that the degree of root colonization varied not only with different Plant growth-promoting rhizobacteria (PGPR) species but also with different isolates in some IAA producing PGPRs which enhanced sporulation of VAM fungi by 45%. Glomus fasciculatum and Azotobacter chroococcum inoculation increased the P concentration in wheat shoots at tillering. Wu et al.33 evaluated the effects of four biofertilizers containing an arbuscular mycorrhizal fungus (G. mosseae or G. intraradices) with or without N2-fixer (A. chroococcum), P-solubilizer (Bacillus megaterium) and K-solubilizer (B. mucilaginous) on soil features and the growth of Zea mays. The application of biofertilizer containing AMF and three species of bacteria significantly increased the growth of Zea mays, nutrients assimilation of the plant (total N, P and K), and soil properties.

Fig. 1. Dry weight of onion plants as influenced by inoculation with Glomus moseae (Gm) and Azotobacter chroococcum (Azoto.), 20 and 40 days after planting (DAS).

Fig. 2. Nitrogen uptake of onion plants as influenced by inoculation with Glomus moseae (Gm) and Azotobacter chroococcum (Azoto.), 20 and 40 days after planting (DAS).

Fig. 3. Phosphorus uptake of onion plants as influenced by inoculation with Glomus moseae (Gm) and Azotobacter chroococcum (Azoto.), 20 and 40 days after planting (DAS).

Triple inoculation of Glomus. geosporum, Azotobacter chroococcum, and Bacillus coagulans resulted in maximum plant biomass, N, P, Zn, and Cu uptake, and biovolume and quality index of Melia azedarach L.seedlings. It also increased the mycorrhizal root colonization and spore numbers in the root zone soil of the inoculated plants over uninoculated control plants. The enzyme activity, namely acid phosphatase and dehydrogenase, in the root zone soil, was found high in the 3-combination treatments and low in the uninoculated control33.

Yousefi et al.34 found that combined application of phosphate solubilizing bacteria (PSB) and arbuscular mycorrhizal fungi increased shoot dry matter yield, seed grain spike number and grain yield by 52, 19 and 26%, respectively compared to the control. Vafadar et al.35 reported that stevioside, chlorophyll, and NPK content in plants increased root and shoot biomass by a single microorganism. However, such increased effects are further enhanced significantly due to dual compatible mixtures of inoculants resulting from their strong synergistic relationships among themselves. All growth parameters recorded the highest in 60-days-old plants in the treatment of Glomus + Azotobacter and followed with Glomus + Bacillus and Azotobacter + Pseudomonas treatments, respectively. Kumar et al.36 found that a significant improvement in the shoot height, shoot diameter, fruit yield/plant, and seed yield (g)/plant was evident in 18-month-old Jatropha plants under field conditions when Azotobacter and AMF were co-inoculated.


The results showed that Azotobacter chroococcum and Arbuscular mycorrhizal fungus (Glomus mosseae) exhibited positive mutual relationships. Dual inoculation of onion with Azotobacter and AM fungi increased bacterial and actinomycetes numbers, nitrogenase activity in onion rhizosphere, dry weight, N, and P uptake. Accordingly soil inoculation with these microorganisms participated in better growth of onion plants and may be applied to other crop plants for better growth, thereby helping to reduce the industrial application of fertilizers and alleviate environmental pollution. Further research is required to investigate these microorganisms under field conditions.


The author would like to thank College of Sciences, Umm Al-Qura University, Kingdom of Saudi Arabia for supporting his study.


This article does not contain any studies with human participants or animals performed by any of the authors.

All datasets generated or analyzed during this study are included in the manuscript and/or the Supplementary Files.

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