Research Article | Open Access
Lakshmi Kakhandki , Aparna Y Takpere, Smitha Bagali, Sanjay Wavare, Rashmi Karigoudar and Praveen R Shahapur
Department Of Microbiology, BLDE(DU) Shri. B.M. Patil Medical College, Hospital & Research Centre, Vijayapur – 586 103, Karnataka, India.
J Pure Appl Microbiol. 2020;14(2):1353-1358 | Article Number: 6157
https://doi.org/10.22207/JPAM.14.2.32 | © The Author(s). 2020
Received: 11/03/2020 | Accepted: 16/05/2020 | Published: 12/06/2020
Abstract

The antibiogram gives the periodic summary of antimicrobial susceptibilities of local bacterial isolates submitted to the hospitals microbiology laboratory. Antibiogram can be of great use in assessing the local susceptibility rates and can serve as a tool in designing the empirical antibiotic therapy and also in monitoring the resistance trends over time within in an institution. Pus samples from various clinical conditions like abscess, cellulitis, necrotizing fasciitis, wound infections; diabetic foot ulcers were included in the study. A total of 1124 positive cultures were obtained out of which 736 yielded various Gram negative organisms and 488 were Gram positive organisms. Only Gram negative organisms were considered in the study as gram negative organisms are common etiological agents of skin and soft tissue infections and pose a great challenge to the treating physician as they are known to develop a high antimicrobial resistance. The organisms isolated in our hospital were Pseudomonas aeruginosa (192), Klebsiella pneumonia (173), Escherichia coli (168), Citrobacter species (117), Acinetobacter species (47), and Proteus species (39). In our study which aims at formulating an empirical therapy for Gram negative organisms the drugs with highest sensitivity were Imipenem (51%), Amikacin (43%), Meropenem (38%), Tobramycin (36%), and Ciprofloxacin (34%) Gentamicin (34%), Netimicin (33%), Cotrimoxazole (32%), Piperacillin (28%),Tetracycline (28%), Ceftazidime (28%), Levofloxacin (26%), Ceftriaxone (26%), Colistin (22%), Carbenecillin (21%), Cefoperazone (21%), Cefoperazone +Sulbactum (21%), Azonetrem (21%), Cefipime (20%), Cefuroxime (17%), Cephaxlein (15%), Ampicillin (12%), Amoxyclav (10%). With the knowledge of most commonly isolated organisms causing SSTIs and their antimicrobial susceptibility patterns the clinicians can start the most likely antibiotic and can change accordingly once the sensitivity report is available.

Keywords

Resistance, Antibiogram, Empirical therapy, Pseudomonas aeruginosa, Klebsiella pneumonia

Introduction

Antimicrobial resistance is a global challenge. Survival of the fittest strategy by acquisition of resistant genes like any other living being has been used by bacteria. This can be slowed down by reducing the selective pressure on bacteria causing infectious diseases1.

The antibiogram gives the periodic summary of antimicrobial susceptibilities of local bacterial isolates submitted to the hospitals microbiology laboratory. Antibiogram can be of great use in assessing the local susceptibility rates and can serve as a tool in designing the empirical antibiotic therapy and also in monitoring the resistance trends over time within in an institution2.

Antimicrobial resistance (AMR) in Gram negative bacteria (GNB) has been a significant cause of severe infections across the world, with increasing morbidity and mortality rates, prolonged hospitalization, significant increase in the cost of medical care and also increased rates of hospital acquired infections3.

Skin and Soft tissue infections involve the microbial invasion of the skin and underlying tissues and range from mild infections such as pyoderma to serious life threatening infections such as necrotizing fasciitis4.

The risk factors may be patient related to age more than 60 years, malnutrition, diabetes, immunosuppression, skin colonization with Methicillin Resistant Staphylococcus aureus (MRSA), presence of skin diseases, smoking and obesity. Procedure related risk factors like improper surgical scrub, inadequate skin antisepsis, prolonged operative time, inadequate antimicrobial prophylaxis, poor perioperative glycemic control surgical drains, inadequate disinfection and sterilization, emergency procedure and perioperative shaving 5.

There is a significant variation in the resistance profile of the pathogenic bacteria across the world though AMR is rising globally. It is therefore necessary to monitor the rates of AMR in the clinically important pathogens across the world. The changing trends in resistance pattern over time have to be tracked regularly in order to guide the appropriate therapeutic strategies to combat infections due to drug‑resistant pathogens. Many large‑scale surveillance studies are being conducted to monitor AMR across the globe. Studies have reported that the burden of AMR is high in Asian countries. However, surveillance studies in India being negligible, incidence rates and real burden of AMR in India is underreported. The study for monitoring AMR trend is a global surveillance program intended to monitor the efficacy of antimicrobials against GNB.6.

Hence the purpose of this study is to determine the current antimicrobial sensitivity pattern of Gram negative bacteria causing skin and soft tissue infection and formulate a comprehensive empirical antibiotic approach for managing the patients with skin and soft tissue infections caused by Gram negative organisms.

Materials and Methods

The study was carried out in the department of Microbiology (BLDE (DU) Shri B M Patil Medical College Hospital & Research Centre Vijaypur Karnataka India) from January 2019 to December 2019. All the cultures yielding Gram negative organisms were included in the study. Patients of both the sexes irrespective of age group admitted in the Department of General Surgery, Orthopedics, and Obstetrics for skin and soft tissue infections were included in the study.

Pus samples from various clinical conditions like abscess, cellulites, necrotizing fasciitis, wound infections; diabetic foot ulcers were included in the study. A total of 1124 positive cultures were obtained out of which 736 yielded various Gram negative organisms and 488 were Grampositive organisms.

Sample collection
The lesions were cleaned with sterile normal saline. Special care was taken to avoid contamination by normal flora of skin or mucus surface, where possible pus was aspirated or exudates collected. The specimens were transported in sterile, leak-proof containers. Pus samples were also collected aseptically using sterile swabs.

Sample processing
Swabs were inoculated on to Blood agar and Mac-Conkey’s agar plate. The plates were incubated aerobically at 37°C overnight. The isolates were identified by Gram staining, Colony morphology, Standard biochemical tests like Oxidase, Catalase, Indole, Methyl red, Vogues Proskauer test and Hydrogen sulphide production test.

The antimicrobial susceptibility testing was performed by modifiedKirby-Bauer disc diffusion technique following clinical and laboratory standards institute guidelines7.

The antibiotics tested were Ampicillin Amoxyclav, Cefuroxime, Tetracycline, Gentamicin, Cotrimoxazole, Ciprofloxacin, Cephalexin, Amikacin, Lomefloxacin, Netimicin, Tobramicin, Piperacillin, Ceftriaxone, Ceftazidime, Imipenem, Meropenem, Levofloxacin, Cefepime, Azonetrem, Cefoperazone +Sulbactum, Cefoperazone, Carbenecillin, Colistin. Antibiotics from all classes were selected.

RESULTS

A total of 1124 cultures yielded growth, out of which 736 were various Gram negative organisms and 488 were Gram positive organisms. Gram negative organisms were considered for the study. All the isolates were identified by the Gram Stain and biochemical reactions.

Out of 736 organisms isolated, 192 were Pseudomonas aeruginosa, 173 were Klebsiella pneumonia, 168 were Escherichia coli, 117 were Citrobacter species, 47 were Acinetobacter species, and 39 were Proteus species(Table No 1).

Table (1):
Bacteriological profile of Pus Samples.

Sr. No.
Gram negative isolates
No of Isolates
1
Pseudomonas aeruginosa
192
2
Klebsiella pneumonia
173
3
Escherichia coli
168
4
Citrobacter species
117
5
Acinetobacter species
47
6
Proteus species
39
Total
736

The antibiotics tested were Ampicillin Amoxyclav, Cefuroxime, Tetracycline, Gentamicin, Cotrimoxazole, Ciprofloxacin, Cephalexin, Amikacin, Lomefloxacin, Netilmicin, Tobramicin, Piperacillin, Ceftriazone, Ceftazidime, Imipenem, Meropenem, Levofloxacin, Cefipime, Azonetrem, Cefoperazone+Sulbactum, Cefoperazone, Carbenecillin, Colistin. Table 2 shows the sensitivity pattern of all the gram negative organisms.

Table (2):
Sensitivity Pattern of Gram Negative Bacteria.

 
E. coli (N= 168) %
Acinetobacter Spp (N=  47) %
Klebsiella Spp (N= 173) %
Pseudomonas aeruginosa (N= 192) %
Citrobacter Spp
(N= 117) %
Proteus Spp
(N= 39)%
Ampicillin
12
19
13
23
3
13
Amoxyclav
11
21
36
11
3
15
Cefuroxime
20
21
29
23
6
15
Tetracycline
30
28
29
23
22
18
Gentamicin
60
30
34
22
22
26
Cotrimoxazole
38
26
8
23
25
13
Ciprofloxacin
33
28
36
46
17
31
Cephalexin
18
23
40
23
3
13
Amikacin
71
49
40
30
26
46
Lomefloxacin
29
55
31
23
26
36
Netilmicin
29
32
28
32
31
28
Tobramicin
59
34
22
39
9
23
Piperacillin
26
32
23
39
12
18
Ceftriazone
27
26
57
26
10
23
Ceftazidime
31
36
35
29
15
21
Imipenem
46
51
36
53
42
62
Meropenem
35
43
34
43
32
51
Levofloxacin
29
60
42
5.2
25
26
Cefipime
38
4
40
4.2
6
26
Azonetrem
33
13
40
0
12
13
Cefoperazone
+Sulbactum
40
9
13
0
11
8
Cefoperazone
39
9
36
0.5
11
10
Carbenecillin
21
Colistin
22

Table 3 shows the total sensitivity of all the antibiotics used in the treatment of Gram Negative Bacteria in decreasing order. Imipenem (51%), Amikacin (43%), Meropenem(38%), Tobramycin (36%), Ciprofloxacin (34%), Gentamicin (34%), Netilmicin(33%), Lomefloxacin (32%), Cotrimaxazole (28%), Piperacillin (28%), Tetracycline (28%), Ceftazidime (28%),Levofloxacin (26%), Ceftriaxone (26%), Colistin(22%), Carbenecillin (21%), Cefoperazone (21%), Cefoperazone + Sulbactum (21%), Azonetrem (21%),Cefipime (20%), Cefuroxime (17%), Cephalexin(15%), Ampicillin (12%), Amoxyclav (10%).

Table (3):
Total Sensitivity of all the Antibiotics used in the treatment of Gram Negative Bacteria in decreasing order.

 Antibiotic
Sensitivity %
Imipenem
51
Amikacin
43
Meropenem
38
Tobramycin
36
Ciprofloxacin
34
Gentamicin
34
Netilmicin
33
Lomefloxacin
32
Cotrimaxazole
28
Piperacillin
28
Tetracycline
28
Ceftazidime
28
Levofloxacin
26
Ceftriaxone
26
Colistin
22
Carbenecillin
21
Cefoperazone
21
Cefoperazone+Sulbactum
21
Azonetrem
21
Cefipime
20
Cefuroxime
17
Cephalexin
15
Ampicillin
12
Amoxyclav
10

Table (4):
Drugs used as Empirical therapy.

 Amikacin
(Injection)
 Gentamicin
(Injection)
Tobramycin
(oral&injection)
 Netimicin
(oral&injection)
Ceftazidime
(injection)
Ceftriaxone
(injection)
 Cefotaxime
(injection)
Cefipime
(injection)
Cephalexin
(oral)
Cefuroxime
(oral)
Cefoperazone-Sulbactum Piperacillin
(injection)
Cotrimoxazole
(oral)
Colistin
(injection)
 Imipenem
(injection)
Meropenem
(injection)
DISCUSSION

The organisms isolated in our hospital BLDE (DU) Shri B M Patil Medical College Hospital & Research Centre Vijaypur Karnataka India were Pseudomonas aeruginosa (192), Klebsiella pneumonia (173), Escherichia coli (168), Citrobacter species (117), Acinetobacter species (47), and Proteus species (39) (Table No 1).

Our study which aims at formulating an empirical therapy for Gram negative organisms the drugs with highest sensitivity were Imipenem (51%), Amikacin (43%), Meropenem (38%), Tobramycin (36%), and Ciprofloxacin (34%) Gentamicin (34%), Netimicin (33%), Cotrimoxazole (32%), Piperacillin (28%), Tetracycline (28%), Ceftazidime (28%), Levofloxacin (26%), Ceftriaxone (26%), Colistin (22%), Carbenecillin (21%), Cefoperazone(21%), Cefoperazone + Sulbactum (21%), Azonetrem (21%), Cefipime (20%), Cefuroxime (17%), Cephaxlein(15%), Ampicillin (12%), Amoxyclav (10%) (Table No 3)

Gram negative organisms recovered from Skin & Soft tissue infections among patients were more susceptible to Carbapenems (Imipenem, Meropenem), Aminoglycosides (Amikacin, Tobramycin, Gentamicin) followed by Ciprofloacin and Cotrimoxazole, Piperacillin, 3rd generation Cephalosporins (Ceftazidime, Ceftriaxone, Cefotaxime); Colistin, Carbenecillin 4th Generation Cephalosporins (Cefepime), β lactam/ β-lactamase inhibitor combinations (Cefoperazone-Sulbactaum).

After discussing with the clinicians mainly surgeons a list of first line of drugs was drawn Aminoglycosides (Amikacin, Gentamicin, Tobramicin and Netimicin) which are injectables were given the first priority followed by the 3rd generation Cephalosporins (Ceftazidime, Ceftriaxone, Cefotaxime) then by the 4th generation Cephalosporins (Cefepime) which are available orally also then by b-lactam/ β-lactamase inhibitor combinations (Cefoperazone-Sulbactam) then by the Colistin and keeping the Carbapenems (Imipenem and Meropenem) as reserved drugs both in terms of efficiency and cost though they have highest sensitivity. So list of drugs used as Empirical therapy in the treatment of Gram negative infections is as follows:

Hospital antibiogram can be a guiding tool for empirical therapy and can also track the emergence of resistance among the bacterial isolates in the nosocomial environment. There can be a wide variation in the manner in which the antibiograms are formulated and reported which results in intra and inter hospital comparisons8.

Though the treatment may be dependent on the culture, empirical therapy is  necessary and should be designed so that it can cover the both Gram positive and Gram negative organisms till the culture report is available. Surveillance of the antibiotic sensitivity should be done on regular basis as the pathogens and their sensitivity keep on changing and also vary from unit to unit, hospital to hospital9,10.

It is very much essential that all the clinicians should understand the importance of antibiotic susceptibility testing. Always there has to be mutual sharing of expertise, cooperation and collaboration between the clinicians and microbiologist so that there can be optimum and appropriate use of antibiotics in the management of infectious diseases. Though many studies of regional antibiogram have been reported from India, there is a need for nationwide statics to be generated and made available to the clinicians11.  An ICMR guideline 2019 for the use of antimicrobials is already available for guiding the empirical therapy but the local antibiogram of the hospital will give exact sensitivity pattern which can have a day to day application.

But again it is the treating physician/surgeons decision to choose the class of antibiotic as the antibiotic policy has many limitations and also the patient factor needs to be considered including the type and severity of infection, the infecting organism, past antibiotic history.

Bacterial antimicrobial resistance is a great challenge to the medical community and also to the patients in terms of increase in morbidity, mortality and economic burden. Political involvementie the health ministry has to come forward with strict implementation of national antibiotic policies with the cooperation of private corporate setups.

Clinician should not be pressurized to write an antibiotic on patient’s demand of early recovery; this will be possible only when the patient is aware of the judicious use of antibiotics which can be achieved through public education or campaigns just like other national health education programs12.

It is quite essential to define an antimicrobial stewardship program as an ongoing effort by an health care institution to optimize the antimicrobial use among hospitalized patients to improve patient outcomes, ensure cost effective therapy and reduce adverse squeal of antimicrobial use11.

CONCLUSION

The most commonly isolated gram negative organisms from the skin and soft tissue infections are Pseudomonas aeruginosa, Klebsiella pneumonia,Escherichia coli, Citrobacter species, and Acinetobacter species. The empirical therapy for the infections caused by these organisms are Aminoglycosides(Amikacin, Gentamicin, Tobramicin and Netimicin), 3rd generation Cephalosporins (Ceftazidime, Ceftriaxone, Cefotaxime),4th generation Cephalosporins (Cefepime), b-lactam/ b-lactamase inhibitor combinations (Cefoperazone-Sulbactam),Colistin and keeping the Carbapenems(Imipenem and Meropenem) as reserved drugs both in terms of efficiency and cost though they have highest sensitivity.

Declarations

ACKNOWLEDGMENTS
None.

CONFLICT OF INTEREST
The authors declare that there is no conflict of interest.

AUTHORS’ CONTRIBUTION
All authors listed have made a substantial, direct and intellectual contribution tothe work, and approved it for publication.

FUNDING
None.

ETHICS STATEMENT
Not applicable.

AVAILABILITY OF DATA
All data generated or analysed during this study are included in the manuscript.

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