Research Article | Open Access
Hitendra Yadav1, Sanjeeva Nayaka2 and Manish Dwivedi1
1Amity Institute of Biotechnology, Amity University Uttar Pradesh, Gomtinagar Ext., Lucknow-226028, India.
2Lichenology laboratory, CSIR- National Botanical Research Institute, Rana Pratap Marg, Lucknow-22600, India.
J Pure Appl Microbiol. 2021;15(2):701-708 | Article Number: 6871 | © The Author(s). 2021
Received: 26/01/2021 | Accepted: 24/04/2021 | Published: 13/05/2021

Lichen has a great medicinal value and represents the symbiotic relationship between fungi and algae or cyanobacteria. The genus Usnea longissima(Parmeliaceae), is a fruticose lichen with numerous biological activities like antimicrobial, antifungal and inhibitory activities for plant and human pathogens. Taxonomically it is well distinguished by pale greenish to yellowish-green colour and pendulous thallus with dense branches usually emerging from the main stem. Its fungal partner releases an extracellular compound called Usnic acid, a derivative of Dibenzofuran which is a naturally occurring secondary metabolite. In the present work, antimicrobial activities of Usnea longissimi are explored in various extraction solvents. The crude extracts were prepared in methanol, ethanol, ethyl acetate, acetone and different concentrations (2.5,5,10,15,20mg/ml) followed by the determination of its antimicrobial activity against various microbes viz. Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa and Fusarium oxysporum using agar well diffusion process. The maximum zone of inhibition was observed in the 15 mg/ml methanolic extract for Escherichia coli (34 mm), 10 mg/ml methanolic extract for Staphylococcus aureus (30 mm), 10 mg/ml ethyl acetate for Pseudomonas aeruginosa (16 mm) and 0.5 mg/ml ethanolic extract for Fusariumoxysporium (14 mm). Usnea longissimi have shown significant antibacterial and antifungal activity that encourage us to explore novel antimicrobial components within lichen biodiversity. These lichens further can be used as food supplements to cure various human diseases.


Usnea longissima, thallus extract, Usnic acid, antimicrobial, lichen


Lichens produce the vast number of secondary metabolites with distinct biological properties1,2. Thesemetabolites from lichens including aliphatic and aromatic possesses low molecular weight comparatively3. These metabolites are complex, but predominantly small molecules, which comprise up to 20% of lichen’s dry weight. Various types of components like amino acid derivatives, sugar alcohols, aliphatic acids, mucolytic lactones, monocyclic aromatic compounds, quinines, chromones, xanthones, dibenzofurans, depsides, depsidones, depsones, terpenoids, steroids, carotenoids, and diphenyl ethers are present in secondary metabolites of lichens. Mycobiont produces the secondary metabolites, and accumulate these compounds in the cortex (such as atranorin, parietin, usnic acid, fungal melanins) or the medullary layer (such as physodic acid, physodalic acid, protocetraric acid) in the form of extracellular tiny crystals on the outer surface of the hyphae. The secondary metabolism of the mycobiont also has some influence by the photobiont. Along with this, these lichens have also shown a significant role in estimating air pollution4.

Particular type of secondary metabolites is produced by using the appropriate composition of culture media with nutrients, sugars or polyols, pH, temperature, light, stress etc.

Suitable culture conditions (such as nutrient medium, added sugars or polyols, pH, temperature, light, stress) are required for the production of specific secondary metabolites. In many cases, lichen “tissue” cultures, can produce secondary substances, but the chemistry is different from the secondary metabolite of the corresponding natural lichen. Usnic acid is a natural lichen compound which is used in pharmaceutical preparation5. It is active against microorganisms and viruses as well as analgesics and antipyretics as well as useful in the treatment of hyperproliferative skin diseases, such as psoriasis as well as parasitic infestations. Pulvinic acid extracted from many lichens and fungi of higher groups represent bright yellow and orange pigments with antioxidant properties and boldine shows antioxidant activity, anti-inflammatory effects, as well as photoprotector capacity asa natural lichen metabolite6. Antibacterial and antifungal activity reported that some of the lichen metabolites such as atranorin, fumarprotocetraric acid, gyrophoric acid, lecanoric acid, physodic acid protocetraric acid, stictic acid and usnic acid showed relatively strong antimicrobial effects against six bacteria and ten fungi, among which were human, animal and plant pathogens, mycotoxin-producers and food spoilage organisms7. Plaudel has demonstrated8,9the target-specific antibacterial activity of methanol extract against Gram-positive bacteria which were extracted from the five lichens belonging to Antarctica (Caloplaca regalis, Caloplaca spp, Ramalina terebrata, Stereocaulon alpinum) whereas usnic acid produced from lichens (south Spain) has good antibacterial activity against Gram-positive bacteria. Hirtusneanoside isolated from Usnea hirta showed growth inhibitory activities against Gram-positive bacteria. An investigation has10 reported that dichloromethane and methanol extracts of Protousneapoeppigii possess strong antifungal effects against somefungal pathogens (Microsporumgypseum, Trichophyton mentagrophytes and T. rubrum) as well as against the yeasts Candida albicans, C. tropicalis, Saccharomyces cerevisiae. and the filamentous fungi Aspergillus niger, A. flavus and A. fumigates. Protousnea poeppigii contains metabolites like isodivaricatic acid, divaricatinic acid and usnic acid also showed antifungal activity against Microsporum gypseum, Trichophyton mentagrophytes and T. rubrum. Evernic and vulpinic acids causes the substantial inhibition of Ascospore germination of Sordaria fimicola, anthraquinone isolated from methanol extract of Caloplaca cerina has been reported to have significant antifungal1activity and some of isolated bioactive compounds from Usnea longissimi showed its anti-inflammatory activity.Staphylococcus aureus was also found as an important cause of disease in human12, 13.

Usnealongissimi and Cetreliabraunsiana are crucial members of Lichen family and proposed to have substantial antibacterial properties14whereas Usnea longissimi was also found sensitive to air pollution. U. longissima belongs to rare type of lichens showing spore-producing structure.In India U. longissima is known to occur in Eastern Himalayas out of which 6 species were endemic to the region whereas Western Ghats in the southern part of the country represent the occurrence of 40 species out of which 11 species were endemic15. Cetreliabraunsiana shows the various characteristics that may include occurrence of laminalpseudocyphella, broad lobe and synthesis of aromatic substances, e.g., Orcinol-type depsides or depsidones. Previous researches have represented theimpactful response of U.longissimi and Cetreliabraunsiana against some human diseases but still, its wide application in human health yet to be explored16,17and more attention needs to begiven to the exploration of biological activities of these two lichens. Therefore, the present work focused to investigate the antibacterial properties on Usnea longissimi and Cetrelia braunsiana. The findings may facilitate to utilize these lichens for human health.

Materials and Methods

Lichen material
The fresh lichen samples of Usnea longissima and Cetrelia braunsiana were given by Lichenology Laboratory of CSIR-National Botanical Research Institute (NBRI) which was collected previously from Himalaya.

Chemical analysis of the lichen thallus
TLC (Thin Layer Chromatography) is more accurate and very common technique for detecting and identifying lichen substances. The optimal condition has been developed in the laboratory of Culberson18and isemployedas a standard procedure for TLC. The lichen substances were extracted in acetone and then loaded on merck silica gel 60 F254 plates and chromatogram was developed in standard solvent system(Taluene:Dioxane:Acetic acid – 180:60:8). The spots on the chromatography were visualized in normal light and short/long-wavelength ultraviolet (UV) light. Parmelinella wallichiana with the two common lichen substances salazinic acid (Rf class 2) and Atranorin (Rf class7) were used as the control for relating Rf values and Rf class of the unknown’s substances.

Extraction of Lichen Material
Initially, the samples of Usnea longissimia and Cetrelia braunsiana were washed 5-6 times properly with tap water. Subsequent washing was done using distilled water and Polysorbate (Tween) 80 only once followed by frequent washing (4 times) with distilled water. Washing was done to minimize the contamination during the activation process. The washed sample was dried at room temperature (about 73-750 F). After drying, about 200 gm of the material was crushed using HL 1606 500-Watt Mixer Grinder. Five cycles were run to minimize the size of the sample particles.

The powdered lichen (10 gm) was wrapped in cylindrical pouch (size 8 x 6 cm) made up of grade-I Whatmann filter paper and kept inside the extractor arm of Soxhlet apparatus19. A series of solvents as Methanol, Ethanol, Ethyl acetate and Acetone were used for extraction based on their polarity and for the each set of comprehensive extraction of secondary compounds, the process was conducted at the particular boiling temperature for 48 hrs.

After soxhlet, the samples were evaporated using Rotary evaporation (Rotavap).

Preparation of Culture media for growth of microorganism
Nutrient agar plates were prepared by plating the media on petri dishes. Suspend 18.5 gm of nutrient agar powder in 1 litre of distilled water. All the components of culture media were thoroughly dissolved by heating and stirring. Further, sterilized culture media was poured intopetriplate.

PDA plates were prepared by using potato dextrose. Suspended 39.0 gm of potato dextrose agar powder in 1 litre of distilled water. To dissolve it, media was heated and autoclaved. Sterilized media was poured to prepare plates for culture.

Total of five bacterial cultures (Pseudomonas aeruginosa, Agrobacterium tumefaciens, Escherichia coli, Streptococcus mutans and Staphylococcus aureus) and three fungal culture of Aspergillus niger, Candida albicans, Fusarium oxysporum were used in experimentations and screening process. All the cultures were obtained from the Pharmacological Laboratory, National Botanical Research Institute (NBRI), Lucknow. The cultures were stored at 40 C and for further analysis, concerned strains were revived from the same stock in solid and semisolid nutrient agar slants.

Determination of Antimicrobial Activity
Antimicrobial activity was investigated using a well-diffusion method20. The Nutrient Agar medium was transferred into one-fourth volume of Petri plates for antibacterial activity. Potato Dextrose Agar medium was transferred into one-fourth volume of Petri plates for antifungal activity. Inoculation of cultures (100 mg/ml) to this medium was carried out uniformly using glass spreader. Five wells were made in each Petri plate. Different concentration of crude extracts of Methanol, Ethanol, Ethyl acetate and Acetone (i.e. 2.5%, 5%, 10%, 15% and 20%) were prepared as individual stock solutions by mixing Dimethyl Sulfoxide (DMSO) and Distilled Water. These stock solutions of different concentrations were filled in their respective wells along with DMSO as negative control and Streptomycin (in antibacterial testing) and Ketoconazole (in antifungal testing) as a positive control. The plates were labelled and incubated for 24 hrs at 37 degrees Celsius


Chemical analysis of the lichen thallus
Extracted components from the Lichen thallus was further identified by thin-layer chromatography and its analysis of the separated bands reveal the presence of various compounds present in lichen thallus. The occurrence of diverse compounds in the various extracts of Lichen thallus is demonstrated in Figure 1(Table 1). Each component present in extract illustrates the significant alteration in coloursafter it reacts with the spray reagent.

Table (1):
Present acid in natural thallus and extract thallus of Usnea longissimia and Cetrelia braunsiana

Lichen Thallus Acids
Natural thallus Thallus extract
Usnea longissima Usnic acid Evernic acid, Barbatic acid, Diffractaic acid, Usnic acid
Cetrelia braunsiana Alectoronic acid Alectoronic acid, Collatolic acid

Fig. 1. Thin Layer Chromatography showing chemistry of Usnea longissima (1 & 2 natural thallus, 3 ethanol, 4 methanol, 5 ethyl acetate, 6 acetone extract) and Cetrelia braunsiana (7 & 8 natural thallus, 9 ethanol, 10 methanol, 11 ethyl acetate, 12 acetone extract

In TLC, Rf (retardation factor) value play a crucial role to quantify the movement of a components on a stationary phase e.g., silica plate with a suitable solvent system and that can be referred as the ratio of the distance covered by the component from its initial stage to the movement doneby the solvent from the origin point. In the case of Usnea longissimi, the resultant plate revealed the presence of usnic acids in natural thallus and evernic acid, barbatic acid, diffractaic acid, usnic acid in thallus extract. For Cetrelia braunsiana, natural thallus showed the alectoronic acid whereas thallus extract showed the presence of alectoronic acid and collatolic acid (Table 1).

Analysis of antimicrobial activity of lichens extract samples
We found that the Usnea longissimi and Cetrelia braunsiana extracts presented antimicrobial activity against most of the tested micro-organism. Zone diameters were found varied for each extract of Usnea longissimi and Cetrelia braunsiana that shows the effectiveness and amount of present antimicrobial compounds in the extract. Different concentration (2.5mg/ml, 5mg/ml, 10mg/ml, 15mg/ml, 20mg/ml) of extracts from Usnea longissima and Cetralia braunsiana were employed as well as for the extraction different solvent were used namely, methanol, ethanol, ethyl acetate and acetone to get the best results against eight pathogens. The maximum inhibitory effect was recorded in the methanolic extract of Usnea longissima against E. Coli. However, the minimum inhibitory effect was observed in the acetone extract against Fusarium oxysporium (Figure 2 & 3)

Fig. 2. Inhibition zone against the bacterial and fungal pathogen in 20mg/ml concentration of Usnea longissimi. A) Pseudomonas aeruginosa B) Candida albicans C)  Aspergillus niger D) Fusarium oxysporium E) Staphylococcus aureus F) Streptococcus mutans G) Escherichia coli H) Agrobacterium tumefaciens

Fig. 3. Inhibition zone against bacterial and fungal pathogen in 15mg/ml concentration of Cetrelia braunsiana. A) Pseudomonas aeruginosa B) Agrobacterium tumefaciens C) Escherichia coli D) Staphylococcus aureus E) Streptococcus mutans F) Fusarium oxysporium G) Candida albicans  H)  Aspergillus niger

After the analysis of the results, the methanolic extract of theUsnea longissima showed the largest inhibitory zone among the other extracts against the microbes of which their growth is inhibited. The ethanol, ethyl acetate and acetone extracts were slightly less active compared to that of the methanol extract. For the methanol extract, the antimicrobial was detected at a concentration a 15mg/ml against E. coli. Based on these results we may conclude that Methanol could be the more suitable solvent for the extraction than ethanol, ethyl acetate and acetone in case of U. longissima.

In present study methanolic extract of Usnea longissimi showed maximum inhibitory concentration with the concentration of 15mg/ml having inhibitory zone of 34 mm against E. coli[Table S1(iv) and Table S1(v)] whereas and minimum inhibitory concentration zone of 10 mm was shown by acetone extract against Fusarium oxiporum [Table S1(iii) and Table S1(v)]. In case of Cetrelia braunsiana, ethanolic extract showed maximum inhibitory concentration zone of 30 mm against Candida albicans having concentration of 20mg/ml [Table S2(v)]. Aspergillus niger represents the minimum inhibitory zone of 12 mm by ethanolic extract of C. braunsiana [Table S2(iii), Table S2(iv), Table S2(v)].

Remarkably, no zone has been observed against Pseudomonas aeruginosa by thallus extracts of the lichens at the concentration of 2.5mg/ml and 5mg/ml in any of the solvents. [Table S1 and Table S2)] that indicates the effective concertation limit of the thallus extract against P. aeruginosa.

Fig. 4. Inhibitory zones recorded from the antimicrobial activity of extract from Cetrelia braunsiana: A) Inhibitory zone variations in 2.5 mg/ml extract. B)  Inhibitory zone variations in 05 mg/ml extract. C) Inhibitory zone variations in 10 mg/ml extract. D) Inhibitory zone variations in 15 mg/ml extract. E) Inhibitory zone variations in 20 mg/ml extract (Table S2)

In the case of Cetralia braunsiana the maximum inhibitory effect was observed in the ethanolic extract (Figure 4) against Candida albicans, while the minimum inhibitory effect was shown in the ethyl extract against Aspergillus niger.

These results clearly indicate that the lichen extract has strong potential to act as secondary metabolites in lichen which causes its antimicrobial activity (Figure 5).

Fig. 5. Inhibitory zones recorded from the antimicrobial activity of extract from Usnea longissima: A) Inhibitory zone variations in 2.5 mg/ml extract. B)  Inhibitory zone variations in 05 mg/ml extract. C) Inhibitory zone variations in 10 mg/ml extract. D) Inhibitory zone variations in 15 mg/ml extract. E) Inhibitory zone variations in 20 mg/ml extract (Table S1)


This investigation aims to explore the overall antimicrobial activity of thallus extracts of lichens, specifically Usnea longissima and Cetrelia braunsiana. After the studies, a certain correlation was established between the antimicrobial activity and the concentration of thallus extract in various solvents. In previous studies, some work has been done on antibacterial activity of lichen9 but still, further investigation needs to be done to implement novel properties of lichen towards human health and diseases. This study and outcomes on lichen haveshed a light on its antimicrobial properties that indicate the need for lichens and its harvesting on large scale to benefit mankind. In this investigation,we found methanol and ethanol extract of Usnealongissima and Cetrelia braunsianaas a potent antimicrobial and antifungal agent. From the result obtained in the present study, it can be speculated that U. longissima and C. braunsiana have very broad antimicrobial activity with the ethanol and methanol extract. On the basis of results, it is suggested that the extracts of U. longissima and C.braunsiana can be used as a source of natural antimicrobial component for food supplement or in the medicinal or pharmaceutical industry. The study encourages to explore more to novel antimicrobial biomolecules within lichen biodiversity. Some of the bioactive phenolic compound from medicinal lichens have been characterized by researchers14that shows its wide application in human welfare.

Another major aspect of lichen that showed the presence of secondary metabolites in its thallus which are responsible for their antimicrobial activity. But in my studies, the lichen species taken during this experiment did not show a strong inhibitory effect against pathogenic fungi. There could be some reason behind this property of lichen shown by its thallus extract as explained here. i) The acids present in these lichen species do not have any antimicrobial effect.ii) The acids present in these species do not properly get dissolved in acetone. 3) The secondary metabolites extract used in this experiment may be of weaker concentration and henceforth ineffective against a fungal pathogen. 4) The combination of acids present in lichen species is not effective with each other. Further investigations on the antimicrobial activity as well as the economical and efficient isolation process of the metabolite from the lichens are needed.


Additional file: Additional Table S1- S2.


MD would like to thank DST-INSPIRE Faculty award (2017), Government of India.

The authors declare that there is no conflict of interest.

SN and MD have conceptualized the work. SN has supervised the work. The formal analysis was done by HY, SN and MD. Experiments were performed by HY and the manuscript was written by HY and MD.


Not applicable.

All datasets generated or analyzed during this study are included in the manuscript.

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