Recent Advances in using Lipomyces starkeyi for the Production of Single-Cell Oil

The clean energy demand and limited fossil fuel reserves require an alternate source that is sustainable and eco-friendly. This demand for clean energy steered the introduction of biofuels such as bioethanol and biodiesel. The third-generation biodiesel is promising as it surpasses the difficulties associated with food security and land usage. The third-generation biodiesel comprises biodiesel derived from oil produced by oleaginous microbes. The term oleaginous refers to microbes with the ability to accumulate lipids to about 20% of the biomass and is found in the form of triacylglycerols. Yeasts can be grown easily on a commercial scale and are amenable to modifications to increase single-cell oil (SCO) productivity. The oleaginous yeast L. starkeyi is a potential lipid producer that can accumulate up to 70% of SCO of its cell dry weight under optimum conditions. Compared to other oleaginous organisms, it can be grown on a wide range of feedstock and a good part of the lipid produced can be converted to biodiesel. This review presents the recent advances in single-cell oil production from L starkeyi and strategies to increase lipid production are analyzed.


INTRODUCTION
In the pursuit to achieve net zero emissions of greenhouse gases by 2050, the energy sector needs to switch to clean energy options to meet their demand.Currently, fossil fuels meet about 80% of the world's demand and other energy sources are nuclear power, renewable sources and biofuels. 1On the other hand, the limited oil reserves also drive the implementation of alternative energy sources.
Biofuel is derived from biomass and the most established biofuels are bioethanol and biodiesel.It is estimated that the global biofuel market size will exceed nearly 201.21 billion US$ by 2030. 2 Bioethanol (C2) is usually blended with gasoline (C4-C9) 3 while biodiesel is a substitute in diesel engines without any engine modification.Bioethanol is synthesized by the alcoholic fermentation of sugars that are derived from the hydrolysis of biomass.Biodiesel is an excellent choice because of its renewability, safety to use in any diesel engine, high efficiency and engine durability.Moreover, it is nontoxic, nonflammable and has a greater biodegradability. 4The firstgeneration biodiesel has been commercialized and its current production is about 50 billion litres on a global scale. 5Though it has good combustion quality in IC engines, it is a threat to food security as produced from vegetable oil and animal fat. 6Usually, vegetable oil such as peanut oil, soybean oil, sunflower oil, corn oil, rice bran oil, palm oil, coconut oil, olive oil, and rapeseed oil are used as feedstock. 7Nevertheless, currently, about 95% of the biodiesel demand is met by first-generation biodiesel. 8As an alternative to first-generation biodiesel, second-generation biodiesel that is derived from nonedible oil sources emerged. 9It is mainly derived from cheap, inedible and unconventional sources such as crops (e.g.jatropha, mahua), inedible oil (e.g.jojoba oil), inedible sources (e.g.wood, husk, tobacco seed). 10,11econd-generation biodiesel is recognized to be an efficient and eco-friendly alternative to first-generation biodiesel.However, the crops' cultivation requirements of fertile land and other resources led to its limited implementation. 8iodiesel derived from oil produced by oleaginous microbes led to the discovery of third-generation biodiesel.It offers advantages as it is a renewable source, eco-friendly, has no threat to food and land usage, and has ease in manipulation to high cellular lipid accumulation.However, it poses challenges in the production of inadequate biomass on a commercial scale, high investments required for facility and setup at large scale. 12n oleaginous microorganisms (OM), over 20% of the dry weight constitutes lipid under stress conditions of high carbon and low nitrogen nutritional sources. 13The lipid accumulation can be achieved up to 70% or more with appropriate stress conditions to the microbes. 14OMs are constituted by microbial families viz.bacteria, fungi, yeast, and microalgae. 15The oil obtained from OMs has equivalent composition, thermal properties and low viscosity as that of oil obtained from plant and animal sources. 16Oleaginous yeasts are frequently a superior choice for lipid production at a commercial scale because of the higher growth rate, lipid accumulation and productivity. 17bout 160 native yeasts have been reported as oleaginous and the most studied oleaginous yeasts are Cutaneotrichosporon oleaginosus, Rhodotorula toruloides, Yarrowia lipolytica, Rhodotorula glutinis, L. starkeyi, Trichosporon oleaginosus, and Candida tropicalis. 18,19his paper aims to present the recent advances in single-cell oil production from L. starkeyi for its potential as biodiesel feedstock and the benefits of L. starkeyi in sustainable development.Moreover, the opportunities in the strategies to increase lipid production are discussed.

Oleaginous Organisms
The single-cell oil refers to microbial oil and its first commercial production dates back to 1985 by the filamentous fungus Mucor circinelloides. 20The microbial lipids include triacylglycerols (TAG) and glycolipids.The energy reserves, sterol esters and phospholipids constitute the former while membrane constituents the latter.The TAG part has been identified as the major portion of SCO and it is chemically identical to vegetable oils. 21However, the amount and type of lipid composition (Table 1) depends on the genotype of the microbe, its culture conditions and the substrate employed. 22The oleaginous microbes are capable of exploiting low-cost feedstocks such as agro-industrial residues for a higher lipid synthesis. 23The lipid accumulated can be converted to biodiesel by transesterification reactions that are catalyzed by acid/ alkali/ enzymes for the conversion to fatty acid methyl esters. 24n oleaginous yeast, the lipid accumulation happens by de novo (from carbon substrate in nitrogen limitation) or ex novo (from a lipid source or hydrophobic substrates) pathways. 25igh TAG accumulation is observed among yeast and fungi compared to the bacteria as the latter is composed of polyhydroxyalkanoates as storage molecules. 26Among 100 genera with about 1500 species of yeasts, about 30 have been reported to accumulate lipids excessive 25% of their dry biomass. 27,28icroalgae as a source of microbial oil have been investigated recently and it holds advantages in easiness in cultivation and product manufacturing. 29Above all, the lipid obtained from algae is equivalent to vegetable oils for the saturated and low-unsaturated long-chain fatty acids content. 30The commercial production of algal lipids is challenging as the outdoor cultivation systems for photoautotrophic algae gave lower than 20% (dry base) of lipid content. 31,32In addition, the high moisture content of algae cultivated in open ponds or photobioreactors requires dewatering and drying equipment during the downstream processing.These additional investments make the overall cost of algal biofuel much higher. 33,34

Lipomyces starkeyi
The genus Lipomyces belongs to the Lipomycetaceae family and about 16 species have been recognized in the genus so far. 35Among the species, L. starkeyi, unicellular eukaryotic yeast, is the most widely studied because of its potential for lipid synthesis.L. starkeyi was isolated by R. L Starkey (strain number 74) from the soil in the USA. 36L. starkeyi grows in glucose mineral medium at pH=5 and biotin supplementation is required at pH 5.5 to 6.5.Biotin enhances cell growth and its synthesis is inhibited at pH more than 5. 37 In the fermentation media, ions such as Mg 2+ , Mn 2+ , and Zn 2+ are required for cell growth and metabolism, Cu 2+ and Fe 2+ are required as cofactors and phosphate and sulphate are vital for structural components and cell physiology respectively. 38 biomass yield of 1.6 fold was achieved with an appropriate amount of Mn2+ whereas a high lipid yield was obtained at a lower concentration of Zn2+. 39

Fermentation Strategies For Sco Production Fermentation feedstock
Agro-industrial residues are rich in lignocellulosic biomass and are an abundant natural polymer to serve as a fermentation substrate.Pretreatment of the cellulosic biomass is required to make it accessible to the hydrolytic enzymes of the microbes.Pretreatment leads to the solubilization or separation of cellulose, hemicellulose and lignin to facilitate the digestion of lignocellulosic material. 40Approaches for the pretreatment include chemical, mechanical, and biological methods and their different combinations. 41The pretreatment methods influence the long-term storage of the biomass, the concentration of the pretreated biomass and creation of inhibitors in the medium. 42An alternative method employing ionic liquid for the pretreatment of lignocellulosic biomass has proven successful. 43A study on employing seawater-based ionic liquid in the pretreatment of lignocellulosic biomass concluded that the use of seawater renders no negative effect on the pretreatment as well as the enzymatic hydrolysis of biomass obtained.It yielded 54−72% of reducing sugar and lipid yield of 4.5 gL -1 after cultivation of Trichosporon fermentans on wheat straw hydrolysate. 44The metal ions present in the feedstock also influences the lipid formation as observed by Zhang et al. 45 in the utilization of municipal wastewater sludge as the feedstock in fermentation.The presence of Cd 2+ in the fermentation reduced the lipid content from 51% to 41%.However, on the removal of metals from the sludge, lipid content was about half of the one with metals.This is due to the removal of metal ions such as Zn 2+ that enhanced lipid accumulation.L. starkeyi can assimilate a wide range of feedstock as the substrate for lipid production and various feedstock have been reported (Table 2).In the production cost of biodiesel, more than 70% is contributed by the raw materials used and the use of cheap feedstock can greatly reduce this cost. 46 large amount of raw glycerol produced during the process can also be recycled sustainably by using it as a substrate for fermentation. 47

Enhancement of SCO production by L. starkeyi Fermentation strategies Biphasic fed-batch fermentation strategy
For L. starkeyi ATCC 56304, the biphasic system with a supply of glucose during the growth phase and xylose (at 120h) during the lipid accumulation phase resulted in 0.13 g L -1 h -1 oil productivity.It is higher than the fermentation with carbon source as glucose (0.06 g L -1 h -1 ), xylose (0.12 g L -1 h -1 ) and mixed sugars (glucose: xylose at 1:1)(0.09g L -1 h -1 ) in a single phase.However, both mixed (carbon) and biphasic cultures resulted in similar productivity (0.14 g L -1 h -1 ) at a longer fermentation time. 48The mixed carbon sources (glucose and xylose) in a nitrogen-limited mineral medium resulted in the highest lipid content (84.9%) compared to the fermentation using a single carbon source using L. starkeyi NBRC10381. 49

Mode of fermentation
The carbon to nitrogen ratio (C: N ratio, mol mol -1 ) in the media is vital in determining the cellular metabolism state of oleaginous yeast.Fed-batch fermentation is often followed to maintain the cells in the growth phase initially and subsequently in an oil accumulation phase. 50ed-batch cultivation of L. starkeyi yielded an oil content of 27% while batch cultivation resulted in 23.7%. 51In a fed-batch study with two feedings using L. starkeyi, oil accumulated increased from 0.05 g g -1 to 0.11 g g -1 compared to the batch mode cultivation. 52A similar dependence as of low C: N ratio was observed for L. starkeyi for growth and lipid accumulation at a higher agitation rate.As in the case of nitrogen limitation in the culture media, oxygen limitation enhances lipid accumulation although it decreases growth in L. starkeyi. 53he repeated batch cultivation of L. starkeyi DSM 70296 resulted in high cell (85.4gL -1 ) and lipid concentration (41.8 gL -1 ) compared to the other cultivation modes such as batch, fed-batch, and continuous cultures with glucose and xylose as substrate.In the same study, the continuous cultivation (dilution rate = 0.03 h1) with hemi cellulose hydrolysate resulted in high biomass and lipid yield compared to media with glucose and xylose. 52he substrate-feeding strategy affects cell growth and lipid production.As observed in study by Amza et al. 54 that L. starkeyi D35 (Ls-D35 strain) achieved high-density culture on feeding with mixed glucose and xylose as substrates (0.15 w/w substrate) after 96 h while high lipid accumulation was observed in single xylose feeding (0.13 w/w substrate) after 120 h.

Mixed culture of the microbes Co-culturing oleaginous yeasts and microalgae
The mutualistic interaction between oleaginous yeast and microalga has been greatly explored for the production of metabolites.The microalga synthesizes oxygen for the yeast, whereas yeast generates carbon dioxide for the microalga.Additionally, microalga converts the dissolved carbon dioxide in the medium to bicarbonate that on consumption, releases OH− ions and converts media to alkaline.On contrary, yeast growth makes the medium acidic.
The co-cultivation of L. starkeyi and Chloroidium saccharophilum resulted in lipid accumulation of 0.064, 0.064 and 0.081 g lipid•g biomass -1 when grown on YEG (Yeast extract, glucose, (NH 4 ) 2 SO 4 , MgSO 4 .7H 2 O, KH 2 PO 4 ), BBM + G (Bold Basal Medium+ glucose) and medium with Arundo donax hydrolysate respectively. 55he symbiotic relationship between microalga Chlamydomona reinhardtii and L. starkeyi was demonstrated as algae growth was observed in media in which, the organic carbon in the feedstock was utilized in the absence of air showing the dependence on the CO 2-O 2 exchange between the two organisms. 56Co-culturing of L. starkeyi and microalgae (wastewater native majorly Scenedesmus sp. and Chlorella sp.) with a 2:1 inoculum ratio was utilized for lipid production from urban wastewater.The easily assimilated organic substrates in the wastewater were absorbed during the first 3 days of fermentation and it limited the yeast growth.However, it resulted in 15% lipid accumulation at the end of cultivation time. 57

Co-culturing oleaginous yeasts and bacterium
The mutual relationship between yeast and bacterium results in the improvement of metabolic activities leading to enhanced biomass production and lipid accumulation.Karim et al. 58 co-cultured yeast (L.starkeyi) and bacterium (Bacillus cereus) for the simultaneous lipid production and palm oil mill effluent treatment.After the optimization of process parameters using statistical tools, lipid accumulation and COD removal efficiency was observed as 2.95gL -1 and 86.54%, respectively.In a separate study, the synergistic relationship between yeast (L.starkeyi) and a bacterium (Bacillus cereus) resulted in high lipid accumulation.The co-culture on palm oil mill effluents resulted in 25.53% lipid yield and was greater than monoculture. 59

Consolidated bioprocessing
In the utilization of agro-industrial residues in lipid synthesis, a consolidated bioprocessing strategy proved to be technically and economically feasible.In this approach, L. starkeyi fermentation exhibited a starch hydrolysis mechanism as well as lipogenesis with a yield of 18.7% (w/w) of lipid with cassava starch as the substrate. 60In the utilization of rice straw as the substrate, a consolidated bioprocessing consisting of L. starkeyi and Aspergillus oryzae resulted in lipid accumulation of 8.5 g/100 g oven-dry weight of rice straw.The rice straw was pretreated with lime at conditions of Ca(OH) 2 concentration of 12 gL -1 and hydrolysis temperature of 110°C within 60 min. 61or the conversion of lignocellulose to lipid by L. starkeyi, the deficiency of β-glucosidase contributed to the utilization of cellobiose and hence facilitated the simultaneous saccharification and enhanced lipid production. 62The two-step process utilizing the cellulosic paper mill waste as the substrate resulted in lipid accumulation of 37 wt%.In the first step, enzymatic hydrolysis (Cellic® CTec2 25 FPU/g glucan, 48 h, biomass loading 20 gL -1 ) yielded hydrolysates containing glucose and xylose.Subsequently, L. starkeyi was cultivated on the undetoxified hydrolysate in the second step. 63 i p i d y i e l d i n t h e c o n v e r s i o n of wastewater sludge is low as the limited availability of easily consumed nutrients in the sludge.The increase in soluble chemical oxygen demand after the pretreatment increased lipid accumulation.lipid accumulation on the pretreated sludge on cultivation with L. starkeyi was 36.67%g/g, 18.42%, 21.08% and 26.31% for ultrasonication pretreatment, acid pretreatment, a l ka l i n e p ret re at m e nt a n d m i c rowave pretreatment, respectively. 64

Two-stage cultivation
In two-stage cultivation, cell growth and lipid production are spatially separated so that independent optimization of both stages can be achieved.It is a cost-effective approach with a relatively low C/N ratio during the first stage followed by a second stage with a relatively high C/N ratio for the fermentation of L. starkeyi.The nitrogen limitation during the second stage induces lipid accumulation.A two-stage fermentation using L. starkeyi AS 2.1560 with non-sterile glucose solution without additional nutrients resulted in 64.9% of lipid yield. 65In another study, the fermentation media composed of 50% YPD + 50% Orange peel exhibited larger internal droplets in the yeast cells and two-stage operations increased the lipid yield by 18.5-27.1%. 66he co-fermentation of glucose and xylose using L. starkeyi AS 2.1560 in a two-stage fermenter under unsterile conditions was studied by Liu. 67he fed-batch operation in the second stage with co-utilization of non-sterile lignocellulose-derived sugars accumulated high lipid (63.8%) after 46h of incubation.High cell density fermentation by fed-batch mode using L. starkeyi AS 2.1560 on unsterile xylose demonstrated 65.5% lipid content after 48h incubation. 68In the two-stage cultivation of L. starkeyi InaCC Y604 in a nitrogen-limited mineral medium, a mixed carbon source (glucose and xylose) resulted in the highest cell biomass compared to the single carbon source.However, the highest lipid accumulation (65.05% (w/w)) was observed when cellobiose was the carbon source. 69

Immobilization
L. starkeyi DSM 70296, immobilized on de-lignified porous cellulose with 30°C and pH 5.0 as the optimum conditions resulted in enhanced SCO production.In glucose media, the lipid accumulation was increased by 44% while 85% enhanced lipid accumulation was achieved in agro-industrial waste suspensions (orange juice and molasses) based media compared to free cell cultures. 70

Integrated cascade bioprocesses
Giant reed (Arundo donax L) as the substrate for SCO production has been studied by Fidio. 71The lignocellulosic feedstock from perennial grasses was treated by microwaveassisted hydrolysis and enzymatic hydrolysis.L. starkeyi DSM 70,296 cultivation on both the detoxified and partially-detoxified hydrolysates in the integrated cascade process achieved about 8 g SCO from 100 g biomass. 71Sugar cane bagasse on acid hydrolysis in the Parr reactor resulted in hemicellulose fraction (about 82% conversion) that on cultivation with L. starkeyi resulted in a 27.8% (w/w) lipid content. 72

Genetic engineering approach
Genetic engineering and metabolic approaches are widely used for improved lipid production by yeasts.The technique is to increase the metabolic flux rate by overexpression of enzymes associated with acyl-CoA synthesis and Kennedy pathways from glycerol-3-phosphate to TAGs. 73An alternative to enhance lipid accumulation is to inhibit the b-oxidation. 74Transformation methods based on metabolic engineering reported to enhance lipogenesis as well as in the synthesis of high-value metabolites. 75The electroporation procedure in the transformation of L. starkeyi was shown to be a better procedure compared to LiAc-mediated transformation and PEGmediated spheroplast transformation methods in terms of transformation efficiency and time consumption, respectively. 76Agrobacteriummediated transformation in L. starkeyi is an effective method for homologous recombination as well as expression of heterologous genes in L. starkeyi. 77

Mutation
Mutating the oleaginous yeast using techniques such as ethyl methanesulfonate (EMS) treatment and UV irradiation has been reported to increase lipid production.The selection of mutants after mutagenesis is achieved by methods such as cerulenin selection, Sudan Black B staining, and Percoll density gradient centrifugation. 78UV irradiation mutation of L. starkeyi E15 resulted in mutants with enhanced lipid accumulation compared to that of EMS-induced mutation.The lipid accumulation was observed as 32.0%, 44.2% and 68.1% for the wild-type, E15 strain and highest lipid-producing mutant (E15-15), respectively.In the UV irradiation mutation of L. starkeyi E15, three mutants, namely E15-11, E15-15, and E15-25, accumulated particularly higher TAG levels than their counterparts.The amounts of TAG per dry mass of the wild-type and E15 strains were 32.0% and 44.2%, respectively, on day 3, whereas those of E15-11, E15-15, and E15-25 on day 3 were 57.4%, 68.1%, and 60.5%, respectively.A higher TAG accumulation was observed on UV irradiation than that of EMS treatment mutation. 79

Challenges and future research scope
Presently, the high operating expense is a challenge in the industrialization of single-cell oil production by L. starkeyi. 66For an economically advantageous process, the lipid yield and productivity need to be further enhanced.A metabolic engineering approach that targets potential genes can be an approach to enhance lipid production.Extensive research focusing on metabolic alterations should be undertaken.Using competent genetic tools, the possible gene targets in lipid synthesis can be studied.Recent techniques such as CRISPR/Cas9-based genome editing technology can be utilized in the improvement of lipid production.

CONCLUSION
Single-cell oil produced by oleaginous yeast is a non-plant type and renewable source that is used for biodiesel production.L. starkeyi is an excellent lipid producer and can assimilate a wide range of feedstock.The enhancement of lipid production is achieved by different strategies such as maintenance of a high C/N ratio, optimization of nutritional and process parameters, two-stage cultivation, mixed culture of microbes and genetic engineering.Metabolic engineering-based genetic modifications of the yeast L. starkeyi can result in even greater lipid production for the biodiesel industry.